Publications

@article{tomar2022tganet,
  title={TGANet: Text-guided attention for improved polyp segmentation},
  author={Tomar, Nikhil Kumar and Jha, Debesh and Bagci, Ulas and Ali, Sharib},
  journal={arXiv preprint arXiv:2205.04280},
  year={2022}
}

@article{ali2022assessing,
  title={Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge},
  author={Ali, Sharib and Ghatwary, Noha and Jha, Debesh and Isik-Polat, Ece and Polat, Gorkem and Yang, Chen and Li, Wuyang and Galdran, Adrian and Ballester, Miguel-{\'A}ngel Gonz{\'a}lez and Thambawita, Vajira and others},
  journal={arXiv preprint arXiv:2202.12031},
  year={2022}
}

@article{upretee2022fixmatchseg,
  title={FixMatchSeg: Fixing FixMatch for Semi-Supervised Semantic Segmentation},
  author={Upretee, Pratima and Khanal, Bishesh},
  journal={arXiv preprint arXiv:2208.00400},
  year={2022}
}

@article{bhattarai2022histogram,
  title={Histogram of Oriented Gradients Meet Deep Learning: A Novel Multi-task Deep Network for Medical Image Semantic Segmentation},
  author={Bhattarai, Binod and Subedi, Ronast and Gaire, Rebati Raman and Vazquez, Eduard and Stoyanov, Danail},
  journal={arXiv preprint arXiv:2204.01712},
  year={2022}
}

@article{thapa2022task,
  title={Task-Aware Active Learning for Endoscopic Image Analysis},
  author={Thapa, Shrawan Kumar and Poudel, Pranav and Bhattarai, Binod and Stoyanov, Danail},
  journal={arXiv preprint arXiv:2204.03440},
  year={2022}
}

@article{sapkota2022noisy,
  title={Noisy Heuristics NAS: A Network Morphism based Neural Architecture Search using Heuristics},
  author={Sapkota, Suman and Bhattarai, Binod},
  journal={arXiv preprint arXiv:2207.04467},
  year={2022}
}

@article{bano2022fetreg2021,
  title={FetReg2021: A Challenge on Placental Vessel Segmentation and Registration in Fetoscopy},
  author={Bano, Sophia and Casella, Alessandro and Vasconcelos, Francisco and Qayyum, Abdul and Benzinou, Abdesslam and Mazher, Moona and Meriaudeau, Fabrice and Lena, Chiara and Cintorrino, Ilaria Anita and De Paolis, Gaia Romana and others},
  journal={arXiv preprint arXiv:2206.12512},
  year={2022}
}

@article{sapkota2021label,
  title={Label Geometry Aware Discriminator for Conditional Generative Networks},
  author={Sapkota, Suman and Khanal, Bidur and Bhattarai, Binod and Khanal, Bishesh and Kim, Tae-Kyun},
  journal={arXiv preprint arXiv:2105.05501},
  year={2021}
}

@article{wang2021evaluation,
  title={Evaluation and comparison of accurate automated spinal curvature estimation algorithms with spinal anterior-posterior X-Ray images: The AASCE2019 challenge},
  author={Wang, Liansheng and Xie, Cong and Lin, Yi and Zhou, Hong-Yu and Chen, Kailin and Cheng, Dalong and Dubost, Florian and Collery, Benjamin and Khanal, Bidur and Khanal, Bishesh and others},
  journal={Medical Image Analysis},
  volume={72},
  pages={102115},
  year={2021},
  publisher={Elsevier}
}

@article{ali2021iterative,
  title={Iterative deep learning for improved segmentation of endoscopic images},
  author={Ali, Sharib and Tomar, Nikhil K},
  journal={Nordic Machine Intelligence},
  volume={1},
  number={1},
  pages={38--40},
  year={2021}
}

@article{malmqvist2021visualising,
  title={Visualising Argumentation Graphs with Graph Embeddings and t-SNE},
  author={Malmqvist, Lars and Yuan, Tommy and Manandhar, Suresh},
  journal={arXiv preprint arXiv:2107.00528},
  year={2021}
}

@inproceedings{kaul2021penalizing,
  title={Penalizing small errors using an adaptive logarithmic loss},
  author={Kaul, Chaitanya and Pears, Nick and Dai, Hang and Murray-Smith, Roderick and Manandhar, Suresh},
  booktitle={International Conference on Pattern Recognition},
  pages={368--375},
  year={2021},
  organization={Springer}
}

@inproceedings{kaul2021fatnet,
  title={FatNet: A feature-attentive network for 3D point cloud processing},
  author={Kaul, Chaitanya and Pears, Nick and Manandhar, Suresh},
  booktitle={2020 25th International Conference on Pattern Recognition (ICPR)},
  pages={7211--7218},
  year={2021},
  organization={IEEE}
}

@article{khanal2021machine,
  title={Machine-Learning-Assisted Analysis of Colorimetric Assays on Paper Analytical Devices},
  author={Khanal, Bidur and Pokhrel, Pravin and Khanal, Bishesh and Giri, Basant},
  journal={ACS omega},
  volume={6},
  number={49},
  pages={33837--33845},
  year={2021},
  publisher={ACS Publications}
}

@article{sapkota2021input,
  title={Input Invex Neural Network},
  author={Sapkota, Suman and Bhattarai, Binod},
  journal={arXiv preprint arXiv:2106.08748},
  year={2021}
}

@article{wang2021evaluation,
  title={Evaluation and Comparison of Accurate Automated Spinal Curvature Estimation Algorithms with Spinal Anterior-posterior X-Ray Images: The AASCE2019 Challenge},
  author={Wang, Liansheng and Xie, Cong and Lin, Yi and Zhou, Hong-Yu and Chen, Kailin and Cheng, Dalong and Dubost, Florian and Collery, Benjamin and Khanal, Bidur and Khanal, Bishesh and others},
  journal={Medical Image Analysis},
  pages={102115},
  year={2021},
  publisher={Elsevier}
}

@article{pandey2021covid,
  title={COVID-19 control strategies and intervention effects in resource limited settings: a modeling study},
  author={Pandey, Kiran Raj and Subedee, Anup and Khanal, Bishesh and Koirala, Bhagawan},
  journal={Plos one},
  volume={16},
  number={6},
  pages={e0252570},
  year={2021},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{SKELTON2021519,
title = {Towards automated extraction of 2D standard fetal head planes from 3D ultrasound acquisitions: A clinical evaluation and quality assessment comparison},
journal = {Radiography},
volume = {27},
number = {2},
pages = {519-526},
year = {2021},
issn = {1078-8174},
doi = {https://doi.org/10.1016/j.radi.2020.11.006},
url = {https://www.sciencedirect.com/science/article/pii/S1078817420302352},
author = {E. Skelton and J. Matthew and Y. Li and B. Khanal and J.J. {Cerrolaza Martinez} and N. Toussaint and C. Gupta and C. Knight and B. Kainz and J.V. Hajnal and M. Rutherford},
keywords = {Clinical evaluation, Fetal imaging, Quality assessment, Ultrasound},
}

@inproceedings{malmqvist2020determining,
  title={Determining the Acceptability of Abstract Arguments with Graph Convolutional Networks.},
  author={Malmqvist, Lars and Yuan, Tommy and Nightingale, Peter and Manandhar, Suresh},
  booktitle={SAFA@ COMMA},
  pages={47--56},
  year={2020}
}

@article{shrestha2020ensemble,
  title={Ensemble U-Net model for efficient polyp segmentation},
  author={Shrestha, Shruti and Khanal, Bishesh and Ali, Sharib},
  year={2020}
}

@article {Hasan2020.11.07.20227504,
	author = {Hasan, Md. Kamrul and Alam, Md. Ashraful and Dahal, Lavsen and Elahi, Md. Toufick E and Roy, Shidhartho and Wahid, Sifat Redwan and Mart{\'\i}, Robert and Khanal, Bishesh},
	title = {Challenges of Deep Learning Methods for COVID-19 Detection Using Public Datasets},
	elocation-id = {2020.11.07.20227504},
	year = {2020},
	doi = {10.1101/2020.11.07.20227504},
	publisher = {Cold Spring Harbor Laboratory Press},
	
}

@misc{dahal2020uncertainty,
      title={Uncertainty Estimation in Deep 2D Echocardiography Segmentation}, 
      author={Lavsen Dahal and Aayush Kafle and Bishesh Khanal},
      year={2020},
      eprint={2005.09349},
      archivePrefix={arXiv},
      primaryClass={cs.CV}
}

@article{gomez2018oversegmenting,
  title={Oversegmenting Graphs},
  author={Gomez, Alberto and Zimmer, Veronika A and Khanal, Bishesh and Toussaint, Nicolas and Schnabel, Julia A},
  journal={arXiv preprint arXiv:1806.00411},
  year={2018},
 note={under review}
}

@article{khanal2019automatic,
  title={Automatic Cobb Angle Detection using Vertebra Detector and Vertebra Corners Regression},
  author={Khanal, Bidur and Dahal, Lavsen and Adhikari, Prashant and Khanal, Bishesh},
  url={arXiv preprint arXiv:1910.14202},
  year={2019},
  maintitle = {Medical Image Computing and Computer Assisted Intervention (MICCAI) 2019},
  booktitle = {Computational Methods and Clinical Applications for Spine Imaging. CSI Workshop and Challenge}
}

                  @inproceedings{gomez2019image,
                    title={Image Reconstruction in a Manifold of Image Patches: Application to Whole-fetus Ultrasound Imaging},
                    author={Gomez, Alberto and Zimmer, Veronika and Toussaint, Nicolas and Wright, Robert and Clough, James R. and Khanal, Bishesh and Poppel, Milou Van and Skelton, Emily and Matthews, Jackie and Schnabel, Julia A.},
                    booktitle={MLMIR in MICCAI},
                    year={2019},
		    note={Accepted},                    
                  }

@inproceedings{budd2019confident,
  title={Confident Head Circumference Measurement from Ultrasound with Real-time Feedback for Sonographers},
  author={Budd, Samuel and Sinclair, Matthew and Khanal, Bishesh and  Matthew, Jacqueline and Llyod, David and Gomez, Alberto and Toussaint, Nicolas and Robinson, Emma and Kainz, Bernhard},
  booktitle={MICCAI},
  year={2019},
  note={Accepted}
}

@inproceedings{zimmer2019towards,
  title={Towards whole placenta segmentation at late gestation using multi-view ultrasound images},
  author={Zimmer, Veronika and Gomez, Alberto and Skelton, Emily and Toussaint, Nicolas and Zhang, Tong and Khanal, Bishesh and Wright, Robert and Noh, Yohan and Ho, Alison and Matthew, Jacqueline and Schnabel, Julia},
  booktitle={MICCAI},
  year={2019},
  note={Accepted}
}

@inproceedings{wright2019complete,
  title={Complete Fetal Head Compounding from Multi-View 3D Ultrasound},
  author={Wright, Robert and Toussaint, Nicolas and Gomez, Alberto and Zimmer, Veronika and Matthew, Jacqueline and Skelton, Emily and Khanal, Bishesh and Kainz, Bernhard and Reuckert, Daniel and Hajnal, Jo and Schnabel, Julia},
  booktitle={MICCAI},
  year={2019},
  note={Accepted},
}