Publications

Nikhil Kumar Tomar, Debesh Jha, Ulas Bagci, Sharib Ali
TGANet: Text-guided attention for improved polyp segmentation
2022
PDF Bibtex

@article{tomar2022tganet,
  title={TGANet: Text-guided attention for improved polyp segmentation},
  author={Tomar, Nikhil Kumar and Jha, Debesh and Bagci, Ulas and Ali, Sharib},
  journal={arXiv preprint arXiv:2205.04280},
  year={2022}
}

Sharib Ali, Noha Ghatwary, Debesh Jha, Ece Isik-Polat, Gorkem Polat, Chen Yang, Wuyang Li, Adrian Galdran, Miguel-Ángel González Ballester, Vajira Thambawita, Steven Hicks, Sahadev Poudel, Sang-Woong Lee, Ziyi Jin, Tianyuan Gan, ChengHui Yu, JiangPeng Yan, Doyeob Yeo, Hyunseok Lee, Nikhil Kumar Tomar, Mahmood Haithmi, Amr Ahmed, Michael A. Riegler, Christian Daul, Pål Halvorsen, Jens Rittscher, Osama E. Salem, Dominique Lamarque, Renato Cannizzaro, Stefano Realdon, Thomas de Lange, James E. East
Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge
2022
PDF Bibtex

@article{ali2022assessing,
  title={Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge},
  author={Ali, Sharib and Ghatwary, Noha and Jha, Debesh and Isik-Polat, Ece and Polat, Gorkem and Yang, Chen and Li, Wuyang and Galdran, Adrian and Ballester, Miguel-{\'A}ngel Gonz{\'a}lez and Thambawita, Vajira and others},
  journal={arXiv preprint arXiv:2202.12031},
  year={2022}
}

Binod Bhattarai, Ronast Subedi, Rebati Raman Gaire, Eduard Vazquez, Danail Stoyanov
Histogram of Oriented Gradients Meet Deep Learning: A Novel Multi-task Deep Network for Medical Image Semantic Segmentation
2022
PDF Bibtex

@article{bhattarai2022histogram,
  title={Histogram of Oriented Gradients Meet Deep Learning: A Novel Multi-task Deep Network for Medical Image Semantic Segmentation},
  author={Bhattarai, Binod and Subedi, Ronast and Gaire, Rebati Raman and Vazquez, Eduard and Stoyanov, Danail},
  journal={arXiv preprint arXiv:2204.01712},
  year={2022}
}

Shrawan Kumar Thapa, Pranav Poudel, Binod Bhattarai, Danail Stoyanov
Task-Aware Active Learning for Endoscopic Image Analysis
2022
PDF Bibtex

@article{thapa2022task,
  title={Task-Aware Active Learning for Endoscopic Image Analysis},
  author={Thapa, Shrawan Kumar and Poudel, Pranav and Bhattarai, Binod and Stoyanov, Danail},
  journal={arXiv preprint arXiv:2204.03440},
  year={2022}
}

Sophia Bano, Alessandro Casella, Francisco Vasconcelos, Abdul Qayyum, Abdesslam Benzinou, Moona Mazher, Fabrice Meriaudeau, Chiara Lena, Ilaria Anita Cintorrino, Gaia Romana De Paolis, Jessica Biagioli, Daria Grechishnikova, Jing Jiao, Bizhe Bai, Yanyan Qiao, Binod Bhattarai, Rebati Raman Gaire, Ronast Subedi, Eduard Vazquez, Szymon Płotka, Aneta Lisowska, Arkadiusz Sitek, George Attilakos, Ruwan Wimalasundera, Anna L David, Dario Paladini, Jan Deprest, Elena De Momi, Leonardo S Mattos, Sara Moccia, Danail Stoyanov
FetReg2021: A Challenge on Placental Vessel Segmentation and Registration in Fetoscopy
2022
PDF Bibtex

@article{bano2022fetreg2021,
  title={FetReg2021: A Challenge on Placental Vessel Segmentation and Registration in Fetoscopy},
  author={Bano, Sophia and Casella, Alessandro and Vasconcelos, Francisco and Qayyum, Abdul and Benzinou, Abdesslam and Mazher, Moona and Meriaudeau, Fabrice and Lena, Chiara and Cintorrino, Ilaria Anita and De Paolis, Gaia Romana and others},
  journal={arXiv preprint arXiv:2206.12512},
  year={2022}
}

Label Geometry Aware Discriminator for Conditional Generative Networks
ICPR 2022, 2022
PDF Bibtex

@article{sapkota2021label,
  title={Label Geometry Aware Discriminator for Conditional Generative Networks},
  author={Sapkota, Suman and Khanal, Bidur and Bhattarai, Binod and Khanal, Bishesh and Kim, Tae-Kyun},
  journal={arXiv preprint arXiv:2105.05501},
  year={2021}
}

Liansheng Wang, Cong Xie, Yi Lin, Hong-Yu Zhou, Kailin Chen, Dalong Cheng, Florian Dubost, Benjamin Collery, Bidur Khanal, Bishesh Khanal, Rong Tao, Shangliang Xu, Upasana Upadhyay Bharadwaj, Zhusi Zhong, Jie Li, Shuxin Wang, Shuo Li
Evaluation and comparison of accurate automated spinal curvature estimation algorithms with spinal anterior-posterior X-Ray images: The AASCE2019 challenge
Medical Image Analysis, 2021
PDF Bibtex

@article{wang2021evaluation,
  title={Evaluation and comparison of accurate automated spinal curvature estimation algorithms with spinal anterior-posterior X-Ray images: The AASCE2019 challenge},
  author={Wang, Liansheng and Xie, Cong and Lin, Yi and Zhou, Hong-Yu and Chen, Kailin and Cheng, Dalong and Dubost, Florian and Collery, Benjamin and Khanal, Bidur and Khanal, Bishesh and others},
  journal={Medical Image Analysis},
  volume={72},
  pages={102115},
  year={2021},
  publisher={Elsevier}
}

Lars Malmqvist, Tommy Yuan, Suresh Manandhar
Visualising Argumentation Graphs with Graph Embeddings and t-SNE
2021
PDF Bibtex

@article{malmqvist2021visualising,
  title={Visualising Argumentation Graphs with Graph Embeddings and t-SNE},
  author={Malmqvist, Lars and Yuan, Tommy and Manandhar, Suresh},
  journal={arXiv preprint arXiv:2107.00528},
  year={2021}
}

Chaitanya Kaul, Nick Pears, Hang Dai, Roderick Murray-Smith, Suresh Manandhar
Penalizing small errors using an Adaptive Logarithmic Loss
International Conference on Pattern Recognition, Springer, Cham, 2021
PDF Bibtex

@inproceedings{kaul2021penalizing,
  title={Penalizing small errors using an adaptive logarithmic loss},
  author={Kaul, Chaitanya and Pears, Nick and Dai, Hang and Murray-Smith, Roderick and Manandhar, Suresh},
  booktitle={International Conference on Pattern Recognition},
  pages={368--375},
  year={2021},
  organization={Springer}
}

Chaitanya Kaul, Nick Pears, Suresh Manandhar
FatNet: A feature-attentive network for 3D point cloud processing
IEEE, International Conference on Pattern Recognition (ICPR), 2021
PDF Bibtex

@inproceedings{kaul2021fatnet,
  title={FatNet: A feature-attentive network for 3D point cloud processing},
  author={Kaul, Chaitanya and Pears, Nick and Manandhar, Suresh},
  booktitle={2020 25th International Conference on Pattern Recognition (ICPR)},
  pages={7211--7218},
  year={2021},
  organization={IEEE}
}

Bidur Khanal, Pravin Pokhrel, Bishesh Khanal, Basant Giri
Machine-Learning-Assisted Analysis of Colorimetric Assays on Paper Analytical Devices
ACS Omega, 2021
PDF Bibtex

@article{khanal2021machine,
  title={Machine-Learning-Assisted Analysis of Colorimetric Assays on Paper Analytical Devices},
  author={Khanal, Bidur and Pokhrel, Pravin and Khanal, Bishesh and Giri, Basant},
  journal={ACS omega},
  volume={6},
  number={49},
  pages={33837--33845},
  year={2021},
  publisher={ACS Publications}
}

Liansheng Wang, Cong Xie, Yi Lin, Hong-Yu Zhou, Kailin Chen, Dalong Cheng, Florian Dubost, Benjamin Collery, Bidur Khanal, Bishesh Khanal, Rong Tao, Shangliang Xu, Upasana Upadhyay Bharadwaj, Zhusi Zhong, Jie Li, Shuxin Wang, Shuo Li
Evaluation and Comparison of Accurate Automated Spinal Curvature Estimation Algorithms with Spinal Anterior-posterior X-Ray Images: The AASCE2019 Challenge
Medical Image Analysis, 2021
PDF Bibtex

@article{wang2021evaluation,
  title={Evaluation and Comparison of Accurate Automated Spinal Curvature Estimation Algorithms with Spinal Anterior-posterior X-Ray Images: The AASCE2019 Challenge},
  author={Wang, Liansheng and Xie, Cong and Lin, Yi and Zhou, Hong-Yu and Chen, Kailin and Cheng, Dalong and Dubost, Florian and Collery, Benjamin and Khanal, Bidur and Khanal, Bishesh and others},
  journal={Medical Image Analysis},
  pages={102115},
  year={2021},
  publisher={Elsevier}
}

Kiran Raj Pandey, Anup Subedee, Bishesh Khanal, Bhagawan Koirala
COVID-19 control strategies and intervention effects in resource limited settings: a modeling study
PLOS ONE, 2021
PDF Bibtex

@article{pandey2021covid,
  title={COVID-19 control strategies and intervention effects in resource limited settings: a modeling study},
  author={Pandey, Kiran Raj and Subedee, Anup and Khanal, Bishesh and Koirala, Bhagawan},
  journal={Plos one},
  volume={16},
  number={6},
  pages={e0252570},
  year={2021},
  publisher={Public Library of Science San Francisco, CA USA}
}

E Skelton, J Matthew, Y Li, Bishesh Khanal, JJ Cerrolaza Martinez, N Toussaint, C Gupta, C Knight, B Kainz, JV Hajnal, M Rutherford
Towards automated extraction of 2D standard fetal head planes from 3D ultrasound acquisitions: A clinical evaluation and quality assessment comparison
Radiography (Journal), 2021
Bibtex

@article{SKELTON2021519,
title = {Towards automated extraction of 2D standard fetal head planes from 3D ultrasound acquisitions: A clinical evaluation and quality assessment comparison},
journal = {Radiography},
volume = {27},
number = {2},
pages = {519-526},
year = {2021},
issn = {1078-8174},
doi = {https://doi.org/10.1016/j.radi.2020.11.006},
url = {https://www.sciencedirect.com/science/article/pii/S1078817420302352},
author = {E. Skelton and J. Matthew and Y. Li and B. Khanal and J.J. {Cerrolaza Martinez} and N. Toussaint and C. Gupta and C. Knight and B. Kainz and J.V. Hajnal and M. Rutherford},
keywords = {Clinical evaluation, Fetal imaging, Quality assessment, Ultrasound},
}

Lars Malmqvist, Tommy Yuan, Peter Nightingale, Suresh Manandhar
Determining the Acceptability of Abstract Arguments with Graph Convolutional Networks
SAFA@ COMMA, 2020
PDF Bibtex

@inproceedings{malmqvist2020determining,
  title={Determining the Acceptability of Abstract Arguments with Graph Convolutional Networks.},
  author={Malmqvist, Lars and Yuan, Tommy and Nightingale, Peter and Manandhar, Suresh},
  booktitle={SAFA@ COMMA},
  pages={47--56},
  year={2020}
}

Md Kamrul Hasan, Md Ashraful Alam, Lavsen Dahal, Md Toufick E Elahi, Shidhartho Roy, Sifat Redwan Wahid, Robert Marti, Bishesh Khanal
Challenges of Deep Learning Methods for COVID-19 Detection Using Public Datasets
2020
PDF Bibtex

@article {Hasan2020.11.07.20227504,
	author = {Hasan, Md. Kamrul and Alam, Md. Ashraful and Dahal, Lavsen and Elahi, Md. Toufick E and Roy, Shidhartho and Wahid, Sifat Redwan and Mart{\'\i}, Robert and Khanal, Bishesh},
	title = {Challenges of Deep Learning Methods for COVID-19 Detection Using Public Datasets},
	elocation-id = {2020.11.07.20227504},
	year = {2020},
	doi = {10.1101/2020.11.07.20227504},
	publisher = {Cold Spring Harbor Laboratory Press},
	
}

Alberto Gomez, Veronika A. Zimmer, Bishesh Khanal, Nicolas Toussaint, Julia A. Schnabel
Adapted and Oversegmenting Graphs: Application to Geometric Deep Learning
Computer Vision, Deep Learning, Artificial IntelligenceUnder Review, 2019
PDF Bibtex

@article{gomez2018oversegmenting,
  title={Oversegmenting Graphs},
  author={Gomez, Alberto and Zimmer, Veronika A and Khanal, Bishesh and Toussaint, Nicolas and Schnabel, Julia A},
  journal={arXiv preprint arXiv:1806.00411},
  year={2018},
 note={under review}
}

Bidur Khanal, Lavsen Dahal, Prashant Adhikari, Bishesh Khanal
Automatic Cobb Angle Detection using Vertebra Detector and Vertebra Corners Regression
Medical Imaging, Computer Vision, Machine Learning, Artificial IntelligenceComputational Methods and Clinical Applications for Spine Imaging. MICCAI 2019 CSI Workshop & Challenge, Shenzen, China , 2019
PDF Bibtex

@article{khanal2019automatic,
  title={Automatic Cobb Angle Detection using Vertebra Detector and Vertebra Corners Regression},
  author={Khanal, Bidur and Dahal, Lavsen and Adhikari, Prashant and Khanal, Bishesh},
  url={arXiv preprint arXiv:1910.14202},
  year={2019},
  maintitle = {Medical Image Computing and Computer Assisted Intervention (MICCAI) 2019},
  booktitle = {Computational Methods and Clinical Applications for Spine Imaging. CSI Workshop and Challenge}
}

Alberto Gomez, Veronika Zimmer, Nicolas Toussaint, Robert Wright, James R. Clough, Bishesh Khanal, Milou Van Poppel, Emily Skelton, Jackie Matthews, and Julia A. Schnabel
Image Reconstruction in a Manifold of Image Patches: Application to Whole-fetus Ultrasound Imaging
MLMIR workshop in MICCAI (accepted), 2019
Bibtex

                  @inproceedings{gomez2019image,
                    title={Image Reconstruction in a Manifold of Image Patches: Application to Whole-fetus Ultrasound Imaging},
                    author={Gomez, Alberto and Zimmer, Veronika and Toussaint, Nicolas and Wright, Robert and Clough, James R. and Khanal, Bishesh and Poppel, Milou Van and Skelton, Emily and Matthews, Jackie and Schnabel, Julia A.},
                    booktitle={MLMIR in MICCAI},
                    year={2019},
		    note={Accepted},                    
                  }

Budd, Samuel and Sinclair, Matthew and, Bishesh Khanal, and Matthew, Jacqueline and Llyod, David and Gomez, Alberto and Toussaint, Nicolas and Robinson, Emma and Kainz, Bernhard
Confident Head Circumference Measurement from Ultrasound with Real-time Feedback for Sonographers
MICCAI 2019 (Accepted, 31% acceptance rate), 2019
PDF Bibtex

@inproceedings{budd2019confident,
  title={Confident Head Circumference Measurement from Ultrasound with Real-time Feedback for Sonographers},
  author={Budd, Samuel and Sinclair, Matthew and Khanal, Bishesh and  Matthew, Jacqueline and Llyod, David and Gomez, Alberto and Toussaint, Nicolas and Robinson, Emma and Kainz, Bernhard},
  booktitle={MICCAI},
  year={2019},
  note={Accepted}
}

Zimmer, Veronika and Gomez, Alberto and Skelton, Emily and Toussaint, Nicolas and Zhang, Tong and , Bishesh Khanal, and Wright, Robert and Noh, Yohan and Ho, Alison and Matthew, Jacqueline and Schnabel, Julia
Towards whole placenta segmentation at late gestation using multi-view ultrasound images
MICCAI 2019 (Accepted, 31% acceptance rate), 2019
Bibtex

@inproceedings{zimmer2019towards,
  title={Towards whole placenta segmentation at late gestation using multi-view ultrasound images},
  author={Zimmer, Veronika and Gomez, Alberto and Skelton, Emily and Toussaint, Nicolas and Zhang, Tong and Khanal, Bishesh and Wright, Robert and Noh, Yohan and Ho, Alison and Matthew, Jacqueline and Schnabel, Julia},
  booktitle={MICCAI},
  year={2019},
  note={Accepted}
}

Bishesh Khanal, Robert and Toussaint, Nicolas and Gomez, Alberto and Zimmer, Veronika and Matthew, Jacqueline and Skelton, Emily and, Bishesh Khanal, and Kainz, Bernhard and Reuckert, Daniel and Hajnal, Jo and Schnabel, Julia
Complete Fetal Head Compounding from Multi-View 3D Ultrasound
MICCAI 2019 (Accepted, 31% acceptance rate), 2019
Bibtex

@inproceedings{wright2019complete,
  title={Complete Fetal Head Compounding from Multi-View 3D Ultrasound},
  author={Wright, Robert and Toussaint, Nicolas and Gomez, Alberto and Zimmer, Veronika and Matthew, Jacqueline and Skelton, Emily and Khanal, Bishesh and Kainz, Bernhard and Reuckert, Daniel and Hajnal, Jo and Schnabel, Julia},
  booktitle={MICCAI},
  year={2019},
  note={Accepted},
}